BioinformaticsHub

An introduction to programming using Python, a popular language for general-purpose programming, data science, web programming, and more.

Learn to use tools from the Bioconductor project to perform analysis of genomic data.

BLAST finds regions of similarity between biological sequences. The program compares nucleotide or protein sequences to sequence databases

Q&A forum for bioinformatics professionals and students

Swiss Institute of Bioinformatics resource portal proteomics, genomics and systems biology

AI system developed by DeepMind that predicts protein 3D structure from amino acid sequence

Database of 3D structural data of biological macromolecules

InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites.

IMGT is a pioneering international information system in immunogenetics and immunoinformatics.

A walk-through of steps to perform differential gene expression analysis in R with a human dataset.

Samtools is a suite of programs for interacting with high-throughput sequencing data

Galaxy is a free, open-source system for analyzing data, authoring workflows, training and education, publishing tools, managing infrastructure, and more.

A3D 2.0 server for prediction of aggregation propensity in protein structures and rational design of protein solubility.

Biopython is a set of freely available tools for biological computation written in Python by an international team of developers.

Largest publicly available repository of high throughput sequencing data. The archive accepts data from all branches of life as well as metagenomic and environmental surveys

BioJava provides an API to maintain local installations of the PDB, load and manipulate structures, perform standard analysis such as sequence and structure alignments and visualize them in 3D.

Open source bioinformatics library for Ruby

Rosalind is a platform for learning bioinformatics and programming through problem solving.

Single cell gene expression across species

Automatically Generates RNA-seq Data Analysis Notebooks

Comparative analysis of completely sequenced microbial genomes, aiming to facilitate comparative genomics for ortholog identification, paralog clustering, motif analysis and gene order comparison.

Database resource for understanding high-level functions and utilities of the biological system.

A web-service that can generate highly accurate biomolecular structure predictions containing proteins, DNA, RNA, ligands, ions, and also model chemical modifications for proteins and nucleic acids in one platform. It’s powered by the newest AlphaFold 3 model.

An open-source software project for analyzing biological data. Bioconductor uses the R statistical programming language.

AutoDock Vina is an open-source program for doing molecular docking.

A high-performance, easy-to-use, interactive tool for the visual exploration of genomic data. It supports flexible integration of all the common types of genomic data and metadata, investigator-generated or publicly available, loaded from local or cloud sources.

A set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

A snakemake workflow that integrates an array of existing bioinformatics and metabolic modeling tools, for the purpose of predicting metabolic interactions within bacterial communities of microbiomes.

FERMO is a metabolomics dashboard designed to facilitate hypothesis-driven prioritization of molecules and samples, and integrates LC-MS metabolomics data with phenotype information, sample grouping, and genomic data.

Bash scripting allows you to build analytics pipelines in the cloud and work with data stored across multiple files.

A resource of tens of thousands of annotated gene sets for use with GSEA software, divided into Human and Mouse collections.

A global consortium that is mapping every cell type in the human body, creating a 3-dimensional Atlas of human cells to transform our understanding of biology and disease.

An open-source scientific and technical publishing system. Analyze. Share. Reproduce. You have a story to tell with data.

Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing.

Seurat is an R package designed for QC, analysis, and exploration of single-cell RNA-seq data.

The open access resource for human proteins.

Download and visually explore data to understand the functionality of human tissues at the cellular level.

Gene expression across species and biological conditions.

SnapGene is a molecular biology software designed for planning, visualizing, and simulating DNA cloning and genetic engineering workflows. It allows users to easily design plasmids, annotate sequences, simulate PCR, restriction digests, Gibson Assembly, and other molecular cloning techniques.

A highly user-friendly genetic engineering software created by VectorBuilder for viewing, editing and analyzing DNA and protein sequences.

Bioinformatics, molecular biology and antibody discovery tool.

Digitize your lab, automate workflows, and increase productivity with AI. Plan, record, and share experiments using a collaborative, cloud-based notebook.

For macromolecular model building, model completion and validation, particularly suitable for protein modelling using X-ray data. Coot displays maps and models and allows model manipulations

An information-driven flexible docking approach for the modeling of biomolecular complexes.

Join over 24M+ machine learners to share, stress test, and stay up-to-date on all the latest ML techniques and technologies.

Generate references, citations and bibliographies in a whole range of journal styles with just a few clicks.

A programming and numeric computing platform used by millions of engineers and scientists to analyze data, develop algorithms, and create models.

Create professional science figures in minutes. Browse thousands of pre-made icons and templates from more than 30 fields of life sciences.

A global community effort to collect a curated set of open‑source analysis pipelines built using Nextflow.